T. thermophilus RuvC in complex with Holliday junction substrate
DOI:10.2210/pdb4ld0/pdb   NDB ID: NA2569
4LD0
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/dna
    Structure Weight: 52965.65
    Molecule: Crossover junction endodeoxyribonuclease RuvC
    Polymer: 1 Type: protein Length: 169
    Chains: A, B
    EC#: 3.1.22.4   
    Fragment: RuvC
    Mutation: E70Q
    Organism: Thermus thermophilus HB8
    Gene Names: ruvC TTHA1090
    UniProtKB: Protein Feature View | Search PDB | Q5SJC4  
    Molecule: DNA 31-MER
    Polymer: 2 Type: dna Length: 31
    Chains: C
    Molecule: DNA 13-MER
    Polymer: 3 Type: dna Length: 13
    Chains: D
    Molecule: DNA 11-MER
    Polymer: 4 Type: dna Length: 11
    Chains: F
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Thermus thermophilus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 4
    Scientific Name: Synthetic construct   Taxonomy    
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2569
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Gorecka, K.M.,  Komorowska, W.,  Nowotny, M.

    Deposition:   2013-06-24
    Release:   2013-09-04
    Last Modified (REVDAT):   2013-12-04
     
  •   Revision History    Hide
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    2013-12-04
    Citation
    2013-09-18
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   3.75
    R-Value: 0.270 (obs.)
    R-Free: 0.329
    Space Group: P 32 2 1
    Unit Cell:
      Length [Å] Angles [°]
    a = 106.36 α = 90.00 
    b = 106.36 β = 90.00 
    c = 132.65 γ = 120.00