4LCJ

CtBP2 in complex with substrate MTOB

Structural Biology Knowledgebase: 4LCJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.214

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LCJ

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE SUBSTRATE

Total Structure Weight: 314653.94

Macromolecule Entities
Molecule Chains Length Organism Details
C-terminal-binding protein 2 A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 349 Homo sapiens Fragment: UNP residues 31-362
Gene Name(s): CTBP2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D, E, F, G, H NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
KMT
Query on KMT

A, B, C, D, E, F, G, H 4-(METHYLSULFANYL)-2-OXOBUTANOIC ACID
C5 H8 O3 S
SXFSQZDSUWACKX-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
KMT Kd: 1260000 - 2960000 nM (87 - 98) BindingDB
ΔG: -16 - -14 kJ/mol (87 - 98) BindingDB
ΔH: -47.3 - -14 kJ/mol (87 - 98) BindingDB
-TΔS: 32.2 kJ/mol (87) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.86 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.214
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 86.15 α = 90.00
b = 140.60 β = 97.87
c = 135.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-21
  • Released Date: 2014-03-19
  • Deposition author(s): Hilbert, B.J., Schiffer, C.A., Royer Jr., W.E.

Revision History

  • 2014-11-12
    Type: Function and keywords | Details: --
  • 2014-05-14
    Type: Citation | Details: Citation update
  • 2014-04-09
    Type: Citation | Details: Citation update