4LC7

Aminooxazoline inhibitor of BACE-1

Structural Biology Knowledgebase: 4LC7 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.202

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4LC7

Classification: HYDROLASE / HYDROLASE INHIBITOR

Total Structure Weight: 45832.11

Macromolecule Entities
Molecule Chains Length Organism Details
Beta-Secretase-1 A 406 Homo sapiens EC#: 3.4.23.46 IUBMB 4.3.1.23 IUBMB
Fragment: UNP residues 57-453
Gene Name(s): BACE1 Gene View BACE KIAA1149

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1WP
Query on 1WP

A (3aR,7aR)-3a-[3-(5-chloropyridin-3-yl)phenyl]- 3a,4,5,6,7,7a-hexahydro-1,3-benzoxazol-2- amine
C18 H18 Cl N3 O
NVRCQOQFKIFZLP-SJLPKXTDSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NI
Query on NI

A NICKEL (II) ION
Ni
VEQPNABPJHWNSG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1WP N/A in BindingDB
N/A in BindingMoad
IC50: 11800 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.237
  • R-Value Work: 0.202
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 74.94 α = 90.00
b = 103.90 β = 90.00
c = 100.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-21
  • Released Date: 2013-09-18
  • Deposition author(s): Huestis, M.P., Liu, W., Volgraf, M., Purkey, H.E., Wu, C., Wang, W., Smith, D., Vigers, G.P.A., Dutcher, D., Hunt, K.W., Siu, M.

Revision History

No revisions since initial release