4LB0

Crystal structure of a hydroxyproline epimerase from agrobacterium vitis, target efi-506420, with bound trans-4-oh-l-proline

Structural Biology Knowledgebase: 4LB0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.158

Literature

Macromolecules
Sequence Display for 4LB0

Classification: ISOMERASE

Total Structure Weight: 74855.17

Macromolecule Entities
Molecule Chains Length Organism Details
Uncharacterized protein A, B 348 Agrobacterium vitis Gene Name(s): Avi_0518
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HYP
Query on HYP

B 4-HYDROXYPROLINE
HYDROXYPROLINE (Synonym)
C5 H9 N O3
PMMYEEVYMWASQN-DMTCNVIQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, B ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.192
  • R-Value Work: 0.158
  • Space Group: P 42 21 2

Unit Cell:

Length (Å) Angle (°)
a = 178.01 α = 90.00
b = 178.01 β = 90.00
c = 49.74 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-06-20
  • Released Date: 2013-07-17
  • Deposition author(s): Vetting, M.W., Toro, R., Bhosle, R., Al Obaidi, N.F., Morisco, L.L., Wasserman, S.R., Sojitra, S., Stead, M., Washington, E., Glenn, A.S., Chowdhury, S., Evans, B., Hammonds, J., Hillerich, B., Love, J., Seidel, R.D., Imker, H.J., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

Revision History

No revisions since initial release