4L0D

Crystal structure of delta516-525 human cystathionine beta-synthase containing C-terminal 6xHis-tag

Structural Biology Knowledgebase: 4L0D SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.240

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4L0D

Classification: LYASE

Total Structure Weight: 122939.28

Macromolecule Entities
Molecule Chains Length Organism Details
Cystathionine beta-synthase A, B 549 Homo sapiens EC#: 4.2.1.22 IUBMB
Mutation: P2G, ΔI516, ΔQ517, ΔY518, ΔH519, ΔS520, ΔT521, ΔG522, ΔK523, ΔS524, ΔS525
Gene Name(s): CBS Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
HEM
Query on HEM

A, B PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PLP
Query on PLP

A, B PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate (Synonym)
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.97 Å
  • R-Value Free: 0.284
  • R-Value Work: 0.240
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 124.36 α = 90.00
b = 136.20 β = 90.00
c = 169.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-05-31
  • Released Date: 2013-09-18
  • Deposition author(s): Ereno, J., Majtan, T., Oyenarte, I., Kraus, J.P., Martinez-Cruz, L.A.

Revision History

  • 2013-10-16
    Type: Citation | Details: Citation update
  • 2013-10-02
    Type: Citation | Details: Citation update