4KG0

Crystal structure of the drosophila melanogaster neuralized-nhr1 domain

• PDB DOI: https://doi.org/10.2210/pdb4KG0/pdb

• Classification: ENDOCYTOSIS
• Organism(s): Drosophila melanogaster
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-04-28 Released: 2014-01-15 
• Deposition Author(s): Gupta, D., Ehebauer, M.T., Chirgadze, D.Y., Bolanos-Garcia, V.M., Blundell, T.L.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.231 
• R-Value Work: 0.163 
• R-Value Observed: 0.166 

Literature

Crystal structure, biochemical and biophysical characterisation of NHR1 domain of E3 Ubiquitin ligase neutralized

Gupta, D., Beaufils, S., Vie, V., Paboeuf, G., Broadhurst, B., Schweisguth, F., Blundell, T.L., Bolanos-Garcia, V.M.

(2013) Adv Enzyme Res 1: 61-75

• DOI: https://doi.org/10.4236/aer.2013.13007

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 19.21 kDa 
• Atom Count: 1,347 
• Modelled Residue Count: 157 
• Deposited Residue Count: 169 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Protein neuralized	A	169	Drosophila melanogaster	Mutation(s): 0  Gene Names: CG11988, neu, neur
UniProt
Find proteins for P29503 (Drosophila melanogaster) Explore P29503  Go to UniProtKB:  P29503

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
MG	B [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.231 
• R-Value Work: 0.163 
• R-Value Observed: 0.166 
• Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 89.28	α = 90
b = 89.28	β = 90
c = 36.93	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data collection
AMoRE	phasing
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-01-15 
Deposition Author(s): Gupta, D., Ehebauer, M.T., Chirgadze, D.Y., Bolanos-Garcia, V.M., Blundell, T.L.

Revision History  

• Version 1.0: 2014-01-15
  Type: Initial release
  
• Version 1.1: 2023-09-20
  Changes: Data collection, Database references, Derived calculations, Refinement description