4KF6

Crystal structure of human ceramide-1-phosphate transfer protein (CPTP) in complex with 8:0 Ceramide-1-Phosphate (8:0-C1P)

Structural Biology Knowledgebase: 4KF6 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.222

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KF6

Classification: LIPID TRANSPORT

Total Structure Weight: 149939.98

Macromolecule Entities
Molecule Chains Length Organism Details
Glycolipid transfer protein domain-containing protein 1 A, B, C..., D, E, FA, B, C, D, E, F 215 Homo sapiens Gene Name(s): CPTP Gene View GLTPD1

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1T9
Query on 1T9

A, B, C, D, E, F (2S,3R,4E)-3-hydroxy-2-(octanoylamino)octadec- 4-en-1-yl dihydrogen phosphate
C26 H52 N O6 P
VSSNYUXSRXINIP-WRBRXSDHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.19 Å
  • R-Value Free: 0.265
  • R-Value Work: 0.222
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 81.88 α = 90.00
b = 122.40 β = 90.00
c = 149.99 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-26
  • Released Date: 2013-07-17
  • Deposition author(s): Simanshu, D.K., Brown, R.E., Patel, D.J.

Revision History

  • 2013-09-11
    Type: Citation | Details: Citation update