4KD1

CDK2 in complex with Dinaciclib

Structural Biology Knowledgebase: 4KD1 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KD1

Classification: Cell Cycle / Inhibitor

Total Structure Weight: 34436.37

Macromolecule Entities
Molecule Chains Length Organism Details
Cyclin-dependent kinase 2 A 298 Homo sapiens EC#: 2.7.11.22 IUBMB
Fragment: CELL DIVISION PROTEIN KINASE 2, P33 PROTEIN KINASE
Gene Name(s): CDK2 Gene View CDKN2

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1QK
Query on 1QK

A 3-[({3-ethyl-5-[(2S)-2-(2-hydroxyethyl)piperidin- 1-yl]pyrazolo[1,5-a]pyrimidin-7-yl}amino)methyl]- 1-hydroxypyridinium
DINACICLIB (Synonym)
C21 H29 N6 O2
WBUFFOKXERTKGU-SFHVURJKSA-N
Ligand Explorer
 
JSmol
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.193
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 53.69 α = 90.00
b = 71.89 β = 90.00
c = 72.40 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-24
  • Released Date: 2013-09-18
  • Deposition author(s): Martin, M.P., Schonbrunn, E.

Revision History

  • 2013-12-25
    Type: Citation | Details: Citation update