4KBK

CK1d in complex with (3S)-3-{4-[3-(4-fluorophenyl)-1-methyl-1H-pyrazol-4-yl]pyridin-2-yl}morpholine inhibitor

Structural Biology Knowledgebase: 4KBK SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.191

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KBK

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 156752.70

Macromolecule Entities
Molecule Chains Length Organism Details
Casein kinase I isoform delta A, B, C, D 331 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): CSNK1D Gene View HCKID

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1QG
Query on 1QG

A, B, C, D (3S)-3-{4-[3-(4-fluorophenyl)-1-methyl-1H- pyrazol-4-yl]pyridin-2-yl}morpholine
C19 H19 F N4 O
ZVSNVLKUNCNJEG-GOSISDBHSA-N
Ligand Explorer
 
JSmol
SO4
Query on SO4

A, B, C, D SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1QG N/A in BindingDB
IC50: 1000 nM  BindingMOAD
IC50: 6.6 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.191
  • Space Group: P 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.10 α = 108.06
b = 84.76 β = 105.85
c = 89.45 γ = 93.09

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-23
  • Released Date: 2013-09-18
  • Deposition author(s): Liu, S.

Revision History

  • 2013-09-25
    Type: Citation | Details: Citation update