4KBC

CK1d in complex with {4-[3-(4-FLUOROPHENYL)-1H-PYRAZOL-4-YL]PYRIDIN-2-YL}METHANOL inhibitor

Structural Biology Knowledgebase: 4KBC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.185

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4KBC

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 75360.76

Macromolecule Entities
Molecule Chains Length Organism Details
Casein kinase I isoform delta A, B 317 Homo sapiens EC#: 2.7.11.1 IUBMB
Gene Name(s): CSNK1D Gene View HCKID
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1QJ
Query on 1QJ

A, B {4-[3-(4-fluorophenyl)-1H-pyrazol-4-yl]pyridin- 2-yl}methanol
C15 H12 F N3 O
RKBVIYAYFDBXIL-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1QJ N/A in BindingDB
N/A in BindingMoad
IC50: 14.2 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.98 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.185
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.58 α = 90.00
b = 118.14 β = 109.23
c = 61.22 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-23
  • Released Date: 2013-09-18
  • Deposition author(s): Liu, S.

Revision History

  • 2013-09-25
    Type: Citation | Details: Citation update