4KAY

Structure of the soluble domain of Lipooligosaccharide phosphoethanolamine transferase A from Neisseria meningitidis - complex with Zn

Structural Biology Knowledgebase: 4KAY SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.149

Literature

Macromolecules
Sequence Display for 4KAY

Classification: TRANSFERASE

Total Structure Weight: 76475.69

Macromolecule Entities
Molecule Chains Length Organism Details
YhbX/YhjW/YijP/YjdB family protein A, B 335 Neisseria meningitidis EC#: 3.1.3.27 IUBMB
Fragment: Periplasmic Soluble Domain (unp residues 210-544)
Gene Name(s): NMB1638
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ZN
Query on ZN

A, B ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
TPO
Query on TPO
A, B L-PEPTIDE LINKING C4 H10 N O6 P THR

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.78 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.149
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 85.07 α = 90.00
b = 90.52 β = 90.00
c = 91.18 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-04-23
  • Released Date: 2013-07-17
  • Deposition author(s): Vrielink, A., Wanty, C., Anandan, A.

Revision History

  • 2013-10-23
    Type: Citation | Details: Citation update