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Crystal structure of apramycin bound to the leishmanial rRNA A-site
DOI:10.2210/pdb4k31/pdb   NDB ID: NA2343
4K31
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Rna/antibiotic
    Structure Weight: 16871.21
    Molecule: RNA (5'-R(*UP*UP*GP*CP*GP*UP*CP*GP*UP*UP*CP*CP*GP*GP*AP*AP*AP*AP*GP*UP*CP*GP*C)-3')
    Polymer: 1 Type: rna Length: 23
    Chains: B, C
    Organism: Leishmania
     
  •   Structure Validation Hide

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  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Synthetic construct (Leishmania)   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4K32   
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    AM2
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    AM2 C21 H41 N5 O11
    APRAMYCIN
    AM2:4K31
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2343
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Shalev, M.,  Kondo, J.,  Adir, N.,  Baasov, T.

    Deposition:   2013-04-10
    Release:   2013-07-31
    Last Modified (REVDAT):   2013-09-04
     
  •   Revision History    Hide
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    2013-09-04
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   1.41
    R-Value: 0.228 (obs.)
    R-Free: 0.264
    Space Group: P 31
    Unit Cell:
      Length [Å] Angles [°]
    a = 32.79 α = 90.00 
    b = 32.79 β = 90.00 
    c = 107.40 γ = 120.00