4JY5

Crystal structure of human Fab PGT122, a broadly reactive and potent HIV-1 neutralizing antibody


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.198

Literature

Macromolecules
Sequence Display for 4JY5

Classification: IMMUNE SYSTEM

Total Structure Weight: 48423.39

Macromolecule Entities
Molecule Chains Length Organism Details
PGT122 light chain L 211 Homo sapiens Fragment: Fab
PGT122 heavy chain H 235 Homo sapiens Fragment: Fab

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

H, L GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.242
  • R-Value Work: 0.198
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 210.34 α = 90.00
b = 42.04 β = 100.32
c = 45.05 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-29
  • Released Date: 2013-05-08
  • Deposition author(s): Julien, J.-P., Diwanji, D.C., Burton, D.R., Wilson, I.A.

Revision History

  • 2014-02-05
    Type: Citation | Details: Citation update
  • 2013-05-15
    Type: Citation | Details: Citation update