4JOQ

Putative ribose ABC transporter, periplasmic solute-binding protein from Rhodobacter sphaeroides


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.142
  • R-Value Work: 0.125

Literature

Macromolecules
Sequence Display for 4JOQ

Classification: TRANSPORT PROTEIN

Total Structure Weight: 65165.79

Macromolecule Entities
Molecule Chains Length Organism Details
ABC ribose transporter, periplasmic solute-binding protein A, B 297 Rhodobacter sphaeroides Mutation: N153H, S214P
Gene Name(s): Rsph17025_2685
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EDO
Query on EDO

B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 86.10 α = 90.00
b = 86.10 β = 90.00
c = 199.99 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-03-18
  • Released Date: 2013-04-10
  • Deposition author(s): Osipiuk, J., Tesar, C., Endres, M., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

No revisions since initial release