4JDE

Crystal structure of PUD-1/PUD-2 heterodimer

Structural Biology Knowledgebase: 4JDE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.192

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4JDE

Classification: UNKNOWN FUNCTION

Total Structure Weight: 33525.73

Macromolecule Entities
Molecule Chains Length Organism Details
Protein F15E11.13 A 144 Caenorhabditis elegans Fragment: UNP RESIDUES 9-151
Gene Name(s): pud-1.2 pud-1.1 CELE_F15E11.13 CELE_Y19D10B.7 F15E11.13 Y19D10B.7
Protein F15E11.1 B 146 Caenorhabditis elegans Fragment: UNP RESIDUES 7-152
Gene Name(s): pud-2.1 pud-2.2 CELE_F15E11.1 CELE_F15E11.14 F15E11.1 F15E11.14

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.192
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 52.99 α = 90.00
b = 89.78 β = 90.00
c = 102.50 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-25
  • Released Date: 2013-11-06
  • Deposition author(s): Luo, S., Ye, K.

Revision History

No revisions since initial release