4J7N

Crystal structure of mouse DXO in complex with M7GPPPG cap

Structural Biology Knowledgebase: 4J7N SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J7N

Classification: HYDROLASE

Total Structure Weight: 45029.08

Macromolecule Entities
Molecule Chains Length Organism Details
Protein Dom3Z A 378 Mus musculus EC#: 3.1.13 IUBMB 3.6.1 IUBMB
Gene Name(s): Dxo Dom3z Ng6

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GTG
Query on GTG

A 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE
MRNA CAP ANALOG N7-METHYL GPPPG (Synonym)
C21 H30 N10 O18 P3
FHHZHGZBHYYWTG-INFSMZHSSA-O
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
9MG
Query on 9MG

A 9-METHYLGUANINE
C6 H7 N5 O
UUWJNBOCAPUTBK-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.5 Å
  • R-Value Free: 0.200
  • R-Value Work: 0.172
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 49.91 α = 90.00
b = 87.46 β = 113.69
c = 53.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-13
  • Released Date: 2013-03-27
  • Deposition author(s): Kilic, T., Chang, J.H., Tong, L.

Revision History

  • 2014-03-12
    Type: Citation | Details: Citation update