4J75

Crystal Structure of a parasite tRNA synthetase, product-bound

Structural Biology Knowledgebase: 4J75 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.193

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4J75

Classification: LIGASE

Total Structure Weight: 95685.46

Macromolecule Entities
Molecule Chains Length Organism Details
Tryptophanyl-tRNA synthetase A, B 409 Plasmodium falciparum EC#: 6.1.1.2 IUBMB
Fragment: UNP residues 229-632

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
TYM
Query on TYM

A, B TRYPTOPHANYL-5'AMP
C21 H24 N7 O8 P
IFQVDHDRFCKAAW-SQIXAUHQSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.222
  • R-Value Work: 0.193
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 117.03 α = 90.00
b = 189.47 β = 90.00
c = 51.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-02-12
  • Released Date: 2013-05-22
  • Deposition author(s): Koh, C.Y., Kim, J.E., Verlinde, C.L.M.J., Hol, W.G.J.

Revision History

  • 2015-05-27
    Type: Entry authorship | Details: corrected format
  • 2013-06-12
    Type: Citation | Details: Citation update
  • 2013-05-29
    Type: Citation | Details: Citation update