4IPZ

SmBz bound to Cyclophilin A

Structural Biology Knowledgebase: 4IPZ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IPZ

Classification: Isomerase / isomerase inhibitor

Total Structure Weight: 19462.29

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidyl-prolyl cis-trans isomerase A A 165 Homo sapiens EC#: 5.2.1.8 IUBMB
Gene Name(s): PPIA Gene View CYPA
SmBz, CYCLOPHILIN A derivative B 11 Tolypocladium inflatum Mutation: X7X

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Biologically Interesting Molecules 1 Unique
ID Chains Name Type/Class 2D Diagram 3D Interactions
PRD_001130 (VAL,ABA,ALA,DAL,MVA,MLE,1JM,BMT) B SmBz, cyclosporin A derivative Cyclic peptide /
Immunosuppressant
Ligand Explorer Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol) Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.67 Å
  • R-Value Free: 0.218
  • R-Value Work: 0.172
  • Space Group: I 2 2 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.18 α = 90.00
b = 64.60 β = 90.00
c = 80.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-10
  • Released Date: 2013-11-06
  • Deposition author(s): Price, A.J., Jacques, D.A., James, L.C.

Revision History

  • 2013-12-04
    Type: Citation | Details: Citation update