4IPN

The complex structure of 6-phospho-beta-glucosidase BglA-2 with thiocellobiose-6P from Streptococcus pneumoniae

Structural Biology Knowledgebase: 4IPN SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.175

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IPN

Classification: HYDROLASE

Total Structure Weight: 113329.91

Macromolecule Entities
Molecule Chains Length Organism Details
6-phospho-beta-glucosidase B, E 487 Streptococcus pneumoniae EC#: 3.2.1.86 IUBMB
Gene Name(s): bglA-2 SP_0578

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1FT
Query on 1FT

B, E 4-S-(6-O-phosphono-alpha-L-idopyranosyl)- 4-thio-beta-D-glucopyranose
thiocellobiose-6P (Synonym)
C12 H23 O13 P S
XGJJBBUPFWZKFA-GABYZZBISA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1FT N/A in BindingDB
N/A in BindingMoad
Kd: 408700 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.41 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.175
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 184.03 α = 90.00
b = 66.65 β = 136.33
c = 133.35 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-10
  • Released Date: 2013-04-24
  • Deposition author(s): Yu, W.L., Jiang, Y.L, Andreas, P., Cheng, W., Bai, X.H., Ren, Y.M., Thompsonn, J., Zhou, C.Z., Chen, Y.X.

Revision History

  • 2013-07-10
    Type: Citation | Details: Citation update