4INB

Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With benzodiazepine Inhibitor

Structural Biology Knowledgebase: 4INB SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.231

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4INB

Classification: VIRAL PROTEIN / VIRAL PROTEIN INHIBITOR

Total Structure Weight: 16647.09

Macromolecule Entities
Molecule Chains Length Organism Details
Gag protein A 146 Human immunodeficiency virus 1 Fragment: UNP residues 133-278

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1F6
Query on 1F6

A (3Z)-3-{[(2-methoxyethyl)amino]methylidene}- 1-methyl-5-phenyl-7-(trifluoromethyl)-1H- 1,5-benzodiazepine-2,4(3H,5H)-dione
C21 H20 F3 N3 O3
ZVVPSWCRCLQQOH-SSZFMOIBSA-N
Ligand Explorer
 
JSmol
NA
Query on NA

A SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1F6 N/A in BindingDB
IC50: 890 nM  BindingMOAD
IC50: 890 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.266
  • R-Value Work: 0.231
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 68.95 α = 90.00
b = 89.21 β = 90.00
c = 39.27 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-04
  • Released Date: 2013-02-27
  • Deposition author(s): Coulombe, R.

Revision History

  • 2013-03-13
    Type: Citation | Details: Citation update