4IME

Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase K164A Mutant

Structural Biology Knowledgebase: 4IME SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.176

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IME

Classification: LYASE

Total Structure Weight: 261909.09

Macromolecule Entities
Molecule Chains Length Organism Details
N-acetylneuraminate lyase A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 293 Pasteurella multocida EC#: 4.1.3.3 IUBMB
Mutation: K164A, P278S
Gene Name(s): nanA PM1715
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PG6
Query on PG6

G 1-(2-METHOXY-ETHOXY)-2-{2-[2-(2-METHOXY-ETHOXY]- ETHOXY}-ETHANE
C12 H26 O6
DMDPGPKXQDIQQG-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ME2
Query on ME2

B, C, D, E, G 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE
C7 H16 O3
CNJRPYFBORAQAU-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.208
  • R-Value Work: 0.176
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 90.14 α = 90.00
b = 147.71 β = 98.51
c = 111.98 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-02
  • Released Date: 2013-11-06
  • Deposition author(s): Fisher, A.J., Huynh, N.

Revision History

  • 2013-12-11
    Type: Citation | Details: Citation update