4IMC

Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase

Structural Biology Knowledgebase: 4IMC SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.172

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IMC

Classification: LYASE

Total Structure Weight: 132068.83

Macromolecule Entities
Molecule Chains Length Organism Details
N-acetylneuraminate lyase A, B, C, D 293 Pasteurella multocida EC#: 4.1.3.3 IUBMB
Mutation: P278S
Gene Name(s): nanA PM1715

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A, B, C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.85 Å
  • R-Value Free: 0.209
  • R-Value Work: 0.172
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 80.95 α = 90.00
b = 113.47 β = 111.35
c = 82.24 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2013-01-02
  • Released Date: 2013-11-06
  • Deposition author(s): Fisher, A.J., Huynh, N.

Revision History

  • 2013-12-11
    Type: Citation | Details: Citation update