4IJE

Crystal structure of the Zaire ebolavirus VP35 interferon inhibitory domain R312A/K319A/R322A mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.193

Literature

Macromolecules
Sequence Display for 4IJE

Classification: VIRAL PROTEIN

Total Structure Weight: 56359.71

Macromolecule Entities
Molecule Chains Length Organism Details
Polymerase cofactor VP35 A, B, C, D 129 Zaire ebolavirus Fragment: interferon inhibitory domain (UNP residues 218-340)
Mutation: R312A, K319A, R322A
Gene Name(s): VP35
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

B, C, D PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

A POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NA
Query on NA

A, B, D SODIUM ION
Na
FKNQFGJONOIPTF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.193
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 81.01 α = 90.00
b = 81.01 β = 90.00
c = 344.41 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-21
  • Released Date: 2013-10-09
  • Deposition author(s): Binning, J.B., Wang, T., Leung, D.W., Xu, W., Borek, D., Amarasinghe, G.K.

Revision History

  • Version 1_0: 2013-10-09

    Type: Initial release

  • Version 1_1: 2013-12-11

    Type: Database references

  • Version 1_2: 2017-11-15

    Type: Advisory, Refinement description