4IBJ

Ebola virus VP35 bound to small molecule

Structural Biology Knowledgebase: 4IBJ SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.183

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4IBJ

Classification: TRANSCRIPTION / TRANSCRIPTION inhibitor

Total Structure Weight: 29492.00

Macromolecule Entities
Molecule Chains Length Organism Details
Polymerase cofactor VP35 A, B 129 Zaire ebolavirus Fragment: unp residues 215-340
Gene Name(s): VP35

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
1D9
Query on 1D9

A, B 3-{(5S)-3-hydroxy-2-oxo-4-[3-(trifluoromethyl)benzoyl]- 5-[3-(trifluoromethyl)phenyl]-2,5-dihydro- 1H-pyrrol-1-yl}benzoic acid
C26 H15 F6 N O5
MUBQJGQKNOXGPU-FQEVSTJZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
1D9 N/A in BindingDB
Kd: 47000 nM  BindingMOAD
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.54 Å
  • R-Value Free: 0.229
  • R-Value Work: 0.183
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 51.26 α = 90.00
b = 66.35 β = 90.00
c = 72.66 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-12-08
  • Released Date: 2014-03-19
  • Deposition author(s): Brown,C.S., Leung, D.W., Xu, W., Borek, D.M., Otwinowski, Z., Ramanan, P., Stubbs, A.J., Peterson, D.S., Binning, J.M., Amarasinghe, G.K.

Revision History

  • 2014-05-14
    Type: Citation | Details: Citation update