4I78
Crystal structure of a subtype H17 hemagglutinin homologue from A/little yellow-shouldered bat/Guatemala/060/2010 (H17N10)
- PDB DOI: https://doi.org/10.2210/pdb4I78/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10))
- Expression System: Trichoplusia ni
- Mutation(s): Yes 
- Deposited: 2012-11-30 Released: 2013-01-16 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.18 Å
- R-Value Free: 0.258 
- R-Value Work: 0.203 
- R-Value Observed: 0.205 
This is version 2.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin HA1 | 328 | Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) | Mutation(s): 0  Gene Names: HA | ||
UniProt | |||||
Find proteins for H6QM93 (Influenza A virus) Explore H6QM93  Go to UniProtKB:  H6QM93 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | H6QM93 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Hemagglutinin HA2 | 181 | Influenza A virus (A/little yellow-shouldered bat/Guatemala/060/2010(H17N10)) | Mutation(s): 1  Gene Names: HA | ||
UniProt | |||||
Find proteins for H6QM93 (Influenza A virus) Explore H6QM93  Go to UniProtKB:  H6QM93 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | H6QM93 | ||||
Sequence AnnotationsExpand | |||||
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Oligosaccharides
Small Molecules
Ligands 1 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAG Query on NAG | F [auth B] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.18 Å
- R-Value Free: 0.258 
- R-Value Work: 0.203 
- R-Value Observed: 0.205 
- Space Group: H 3 2
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 100.825 | α = 90 |
b = 100.825 | β = 90 |
c = 760.536 | γ = 120 |
Software Name | Purpose |
---|---|
HKL-2000 | data collection |
PHASER | phasing |
REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2013-01-16  Deposition Author(s): Zhu, X., Wilson, I.A.
Revision History (Full details and data files)
- Version 1.0: 2013-01-16
Type: Initial release - Version 1.1: 2013-05-22
Changes: Database references - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary - Version 2.1: 2023-09-20
Changes: Data collection, Database references, Refinement description, Structure summary