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Crystal structure of HCV NS3/4A D168V protease complexed with compound 4
4I32
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Hydrolase/hydrolase Inhibitor
    Structure Weight: 44847.48
    Molecule: Genome polyprotein
    Polymer: 1 Type: protein Length: 187
    Chains: A, B
    EC#: 3.4.21.98    3.6.1.15    3.6.4.13   
    Fragment: NS3 protease domain (UNP Residues 1027-1206)
    Mutation: D1194V
    Organism: Hepatitis C virus (isolate Japanese)
    UniProtKB: Protein Feature View | Search PDB | P26662  
    Molecule: HCV non-structural protein 4A
    Polymer: 2 Type: protein Length: 17
    Chains: C, D
    Fragment: NS3 interacting peptide (UNP Residues 1678-1691)
    Organism: Hepatitis C virus (isolate Japanese)
    UniProtKB: Protein Feature View | Search PDB | P26662  
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Hepatitis c virus   Taxonomy   Common Name: Hcv Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct (Hepatitis C virus (isolate Japanese))   Taxonomy    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    1BV
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    1BV C41 H51 N7 O9 S
    (2R,6S,7E,10E,13aR,14aR,16aS)-2-{[7-methoxy- 8-methyl-2-(propan-2-yloxy)quinolin-4-yl]oxy}- N-[(1-methylcyclopropyl)sulfonyl]-6-{[(1- methyl-1H-pyrazol-3-yl)carbonyl]amino}-5,16- dioxo-1,2,3,6,9,12,13,13a,14,15,16,16a-dodecahydrocyclopropa[e]pyrrolo[1,2- a][1,4]diazacyclopentadecine-14a(5H)-carboxamide
    1BV:4I32
    NA
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    NA Na
    SODIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly 1       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Lemke, C.T.

    Deposition:   2012-11-23
    Release:   2013-01-02
    Last Modified (REVDAT):   2013-03-13
     
  •   Revision History    Hide
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    2013-03-13
    Citation
    2013-01-09
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   2.30
    R-Value: 0.200 (obs.)
    R-Free: 0.248
    Space Group: P 61
    Unit Cell:
      Length [Å] Angles [°]
    a = 93.67 α = 90.00 
    b = 93.67 β = 90.00 
    c = 81.83 γ = 120.00