4I1K

Crystal Structure of VRN1 (Residues 208-341)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.120

Literature

Macromolecules
Sequence Display for 4I1K

Classification: DNA BINDING PROTEIN

Total Structure Weight: 34176.77

Macromolecule Entities
Molecule Chains Length Organism Details
B3 domain-containing transcription factor VRN1 A, B 146 Arabidopsis thaliana Fragment: B3 domain (UNP residues 208-341)
Gene Name(s): VRN1 At3g18990 K13E13.10
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CL
Query on CL

A, B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.166
  • R-Value Work: 0.120
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 106.15 α = 90.00
b = 47.31 β = 114.97
c = 61.41 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-21
  • Released Date: 2012-12-19
  • Deposition author(s): King, G., Chanson, A.H., McCallum, E.J., Ohme-Takagi, M., Byriel, K., Hill, J.M., Martin, J.L., Mylne, J.S.

Revision History

  • Version 1_0: 2012-12-19

    Type: Initial release

  • Version 1_1: 2013-01-02

    Type: Database references

  • Version 1_2: 2013-02-20

    Type: Database references

  • Version 1_3: 2017-11-15

    Type: Advisory, Refinement description