4HTE

Crystal Structure of the C-terminal domain of Nicking Enzyme from Staphylococcus aureus

Structural Biology Knowledgebase: 4HTE SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.267

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HTE

Classification: Hydrolase

Total Structure Weight: 42214.11

Macromolecule Entities
Molecule Chains Length Organism Details
Nicking enzyme A 353 Staphylococcus aureus Fragment: unp residues 254-593
Gene Name(s): nes BN1321_460007 ERS365775_02779 PGO1_p08 SAP014A_018 SAP015D_002 SAP068A_007 SAP069A_033 SAP079A_020 SAP080A_038 SAP082A_025 VRA0057

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.292
  • R-Value Work: 0.267
  • Space Group: P 43 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 75.28 α = 90.00
b = 75.28 β = 90.00
c = 179.85 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-11-01
  • Released Date: 2013-01-30
  • Deposition author(s): Betts, L.

Revision History

  • 2013-03-06
    Type: Citation | Details: Citation update
  • 2013-02-13
    Type: Citation | Details: Citation update