Crystal structure of DdrB from Deinococcus radiodurans bound to ssDNA
DOI:10.2210/pdb4hqb/pdb   NDB ID: NA2119
Primary Citation
  •   Molecular Description Hide
    Classification: DNA Binding Protein/dna
    Structure Weight: 87248.84
    Molecule: Single-stranded DNA-binding protein DdrB
    Polymer: 1 Type: protein Length: 148
    Chains: A, B, C, D, E
    Organism: Deinococcus radiodurans
    Gene Names: ddrB DR_0070
    UniProtKB: Search PDB | Q9RY80   Protein Feature View
    Molecule: 5'-D(*TP*TP*TP*T)-3'
    Polymer: 2 Type: dna Length: 4
    Chains: M
    Molecule: 5'-D(P*TP*TP*TP*TP*T)-3'
    Polymer: 3 Type: dna Length: 5
    Chains: N
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot

  •   Related Citations in PDB Entry (REMARK 1) Hide
  •   Source Hide
    Polymer: 1
    Scientific Name: Deinococcus radiodurans   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
  •   External Domain Annotations Hide
  •   Structural Biology Knowledgebase Data Hide
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA2119
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly 1       
Biological assembly 1 assigned by authors
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  •   Deposition Summary Hide
    Authors:   Sugiman-Marangos, S.N.,  Junop, M.S.

    Deposition:   2012-10-25
    Release:   2013-09-04
    Last Modified (REVDAT):   2013-12-04
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  •   Experimental Details Hide
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.30
    R-Value: 0.193 (obs.)
    R-Free: 0.246
    Space Group: P 32
    Unit Cell:
      Length [Å] Angles [°]
    a = 110.70 α = 90.00 
    b = 110.70 β = 90.00 
    c = 58.78 γ = 120.00