4HE5

Crystal structure of the selenomethionine variant of the C-terminal domain of Geobacillus thermoleovorans putative U32 peptidase

Structural Biology Knowledgebase: 4HE5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.141

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HE5

Classification: UNKNOWN FUNCTION

Total Structure Weight: 10598.76

Macromolecule Entities
Molecule Chains Length Organism Details
Peptidase family U32 A 89 Geobacillus thermoleovorans Fragment: C-terminal domain (UNP Residues 334-422)
Gene Name(s): GTCCBUS3UF5_28720

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.15 Å
  • R-Value Free: 0.170
  • R-Value Work: 0.141
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 45.55 α = 90.00
b = 45.55 β = 90.00
c = 60.90 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-03
  • Released Date: 2012-11-14
  • Deposition author(s): Trillo-Muyo, S., Jasilionis, A., Domagalski, M.J., Chruszcz, M., Minor, W., Kuisiene, N., Arolas, J.L., Sola, M., Gomis-Ruth, F.X.

Revision History

  • 2013-06-19
    Type: Citation | Details: Citation update
  • 2013-02-27
    Type: Citation | Details: Citation update