4HD5

Crystal Structure of BC0361, a polysaccharide deacetylase from Bacillus cereus

Structural Biology Knowledgebase: 4HD5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.178

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4HD5

Classification: HYDROLASE

Total Structure Weight: 40996.35

Macromolecule Entities
Molecule Chains Length Organism Details
Polysaccharide deacetylase A 360 Bacillus cereus Gene Name(s): BC_0361
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PXU
Query on PXU
A L-PEPTIDE LINKING C5 H9 N O3 PRO

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.9 Å
  • R-Value Free: 0.203
  • R-Value Work: 0.178
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 36.46 α = 90.00
b = 52.76 β = 95.82
c = 93.64 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-10-02
  • Released Date: 2012-10-10
  • Deposition author(s): Fadouloglou, V.E., Kokkinidis, M., Glykos, N.M.

Revision History

  • 2013-03-27
    Type: Citation | Details: Citation update
  • 2013-01-30
    Type: Citation | Details: citation update