4H2R

Structure of MHPCO Y270F mutant, 5-hydroxynicotinic acid complex

Structural Biology Knowledgebase: 4H2R SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.207

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4H2R

Classification: OXIDOREDUCTASE

Total Structure Weight: 85814.52

Macromolecule Entities
Molecule Chains Length Organism Details
2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase A, B 379 Mesorhizobium loti EC#: 1.14.12.4 IUBMB
Mutation: Y270F
Gene Name(s): mlr6788
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A, B FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
5HN
Query on 5HN

A 5-hydroxypyridine-3-carboxylic acid
5-Hydroxynicotinic Acid (Synonym)
C6 H5 N O3
ATTDCVLRGFEHEO-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BME
Query on BME

A BETA-MERCAPTOETHANOL
C2 H6 O S
DGVVWUTYPXICAM-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.47 Å
  • R-Value Free: 0.261
  • R-Value Work: 0.207
  • Space Group: C 2 2 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 56.89 α = 90.00
b = 284.55 β = 90.00
c = 125.00 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-09-13
  • Released Date: 2013-09-18
  • Deposition author(s): Kobayashi, J., Yoshida, H., Mikami, B., Hayashi, H., Kamitori, S., Yagi, T.

Revision History

No revisions since initial release