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Crystal Structure of mutant ORR3 in complex with NTD of AraR
DOI:10.2210/pdb4h0e/pdb   NDB ID: NA2023
4H0E
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transcription/dna
    Structure Weight: 32960.64
    Molecule: Arabinose metabolism transcriptional repressor
    Polymer: 1 Type: protein Length: 88
    Chains: A, B
    Fragment: N-terminus domain, UNP RESIDUES 1-68
    Organism: Bacillus subtilis
    Gene Names: araR araC yvbS BSU33970
    UniProtKB: Protein Feature View | Search PDB | P96711  
    Molecule: 5'-D(*AP*AP*AP*TP*TP*TP*GP*TP*CP*CP*GP*TP*AP*CP*AP*TP*TP*TP*TP*AP*T)-3'
    Polymer: 2 Type: dna Length: 21
    Chains: U
    Molecule: 5'-D(*TP*AP*TP*AP*AP*AP*AP*TP*GP*TP*AP*CP*GP*GP*AP*CP*AP*AP*AP*TP*T)-3'
    Polymer: 3 Type: dna Length: 21
    Chains: T
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

  •   Related Citations in PDB Entry (REMARK 1) Hide
     
  •   Source Hide
    Polymer: 1
    Scientific Name: Bacillus subtilis   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4EGY  AraR-NTD-ORA Complex 
    4EGZ  AraR-NTD-Native ORR3 complex 
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    ACT
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    ACT C2 H3 O2
    ACETATE ION
    CA
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    CA Ca
    CALCIUM ION
     
  •   External Domain Annotations Hide
     
  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure: NA2023
     
 
Data in orange boxes are gathered from external resources (when available).
 
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   MyPDB Personal Annotations Hide
     
  •   Deposition Summary Hide
    Authors:   Nair, D.T.,  Jain, D.

    Deposition:   2012-09-08
    Release:   2013-02-06
     
  •   Revision History    Hide
    No revisions since initial release
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    EDS  
    Resolution[Å]:   1.97
    R-Value: 0.221 (obs.)
    R-Free: 0.253
    Space Group: C 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 137.80 α = 90.00 
    b = 42.62 β = 114.92 
    c = 67.44 γ = 90.00