4GZV

Crystal structure of a lipocalin family protein (BACOVA_00364) from Bacteroides ovatus ATCC 8483 at 1.95 A resolution

PDB DOI: https://doi.org/10.2210/pdb4GZV/pdb

Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
Organism(s): Bacteroides ovatus ATCC 8483
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-09-06 Released: 2012-11-07
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.95 Å
R-Value Free: 0.220
R-Value Work: 0.189
R-Value Observed: 0.190

wwPDB Validation 3D Report Full Report

This is version 1.6 of the entry. See complete history.

Literature

Crystal structure of a hypothetical protein (BACOVA_00364) from Bacteroides ovatus ATCC 8483 at 1.95 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Macromolecule Content

Total Structure Weight: 132.75 kDa
Atom Count: 9,393
Modelled Residue Count: 1,084
Deposited Residue Count: 1,136
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
hypothetical protein	A, B, C, D, E A, B, C, D, E, F, G, H	142	Bacteroides ovatus ATCC 8483	Mutation(s): 0 Gene Names: BACOVA_00364, ZP_02063416.1
UniProt
Find proteins for A7LRD6 (Bacteroides ovatus (strain ATCC 8483 / DSM 1896 / JCM 5824 / BCRC 10623 / CCUG 4943 / NCTC 11153)) Explore A7LRD6 Go to UniProtKB: A7LRD6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A7LRD6
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain K [auth B] SDF format, chain L [auth C] SDF format, chain O [auth E] SDF format, chain S [auth H] MOL2 format, chain K [auth B] MOL2 format, chain L [auth C] MOL2 format, chain O [auth E] MOL2 format, chain S [auth H]	K [auth B], L [auth C], O [auth E], S [auth H]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain K [auth B] Focus chain L [auth C] Focus chain O [auth E] Focus chain S [auth H] Interactions & Density Focus chain K [auth B] Focus chain L [auth C] Focus chain O [auth E] Focus chain S [auth H]
ACT Query on ACT Download Ideal Coordinates CCD File SDF format, chain J [auth A] MOL2 format, chain J [auth A]	J [auth A]	ACETATE ION C₂ H₃ O₂ QTBSBXVTEAMEQO-UHFFFAOYSA-M		Interactions Focus chain J [auth A] Interactions & Density Focus chain J [auth A]
NA Query on NA Download Ideal Coordinates CCD File SDF format, chain Q [auth F] MOL2 format, chain Q [auth F]	Q [auth F]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain Q [auth F] Interactions & Density Focus chain Q [auth F]
UNL Query on UNL Download Ideal Coordinates CCD File	I [auth A], M [auth D], N [auth E], P [auth F], R [auth G]	Unknown ligand FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain I [auth A] Focus chain M [auth D] Focus chain N [auth E] Focus chain P [auth F] Focus chain R [auth G] Interactions & Density Focus chain I [auth A] Focus chain M [auth D] Focus chain N [auth E] Focus chain P [auth F] Focus chain R [auth G]