4GTB

T. Maritima FDTS with FAD, dUMP, and Raltitrexed.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.171

Literature

Macromolecules
Sequence Display for 4GTB

Classification: TRANSFERASE / TRANSFERASE INHIBITOR

Total Structure Weight: 29091.35

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidylate synthase thyX A 232 Thermotoga maritima EC#: 2.1.1.148 IUBMB
Gene Name(s): thyX thy1 TM_0449
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
FAD
Query on FAD

A FLAVIN-ADENINE DINUCLEOTIDE
C27 H33 N9 O15 P2
VWWQXMAJTJZDQX-UYBVJOGSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
D16
Query on D16

A TOMUDEX
ZD1694; Raltitrexed (Synonym)
C21 H22 N4 O6 S
IVTVGDXNLFLDRM-HNNXBMFYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
UMP
Query on UMP

A 2'-DEOXYURIDINE 5'-MONOPHOSPHATE
DUMP (Synonym)
C9 H13 N2 O8 P
JSRLJPSBLDHEIO-SHYZEUOFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.7 Å
  • R-Value Free: 0.183
  • R-Value Work: 0.171
  • Space Group: I 41 2 2

Unit Cell:

Length (Å) Angle (°)
a = 110.57 α = 90.00
b = 110.57 β = 90.00
c = 121.73 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-28
  • Released Date: 2012-10-17
  • Deposition author(s): Mathews, I.I., Lesley, S.A., Kohen, A.

Revision History

No revisions since initial release