4GQ0

Crystal structure of AKR1B10 complexed with NADP+ and Caffeic acid phenethyl ester


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.174

Literature

Macromolecules
Sequence Display for 4GQ0

Classification: OXIDOREDUCTASE

Total Structure Weight: 37325.46

Macromolecule Entities
Molecule Chains Length Organism Details
Aldo-keto reductase family 1 member B10 A 318 Homo sapiens EC#: 1.1.1 IUBMB
Mutation: N313D
Gene Name(s): AKR1B10 Gene View AKR1B11
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAP
Query on NAP

A NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE (Synonym)
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
QAP
Query on QAP

A 2-phenylethyl (2E)-3-(3,4-dihydroxyphenyl)prop- 2-enoate
C17 H16 O4
SWUARLUWKZWEBQ-VQHVLOKHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
QAP IC50: 80 nM (99) BindingDB
Ki: 46 nM (99) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.1 Å
  • R-Value Free: 0.225
  • R-Value Work: 0.174
  • Space Group: P 61

Unit Cell:

Length (Å) Angle (°)
a = 90.59 α = 90.00
b = 90.59 β = 90.00
c = 78.37 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-22
  • Released Date: 2013-08-28
  • Deposition author(s): Liping, Z., Xuehua, Z., Shangke, C., Jing, Z., Xiaopeng, H.
  • Previous versions: 3V9Q

Revision History

  • 2013-12-04
    Type: Other