4GPL

Structure of Cbl(TKB) bound to a phosphorylated pentapeptide

Structural Biology Knowledgebase: 4GPL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4GPL

Classification: Ligase / ligase inhibitor

Total Structure Weight: 36553.43

Macromolecule Entities
Molecule Chains Length Organism Details
ACE-PTR-THR-PRO-GLU-PRO, PEPTIDE INHIBITOR A 7 synthetic
E3 ubiquitin-protein ligase CBL B 309 Homo sapiens EC#: 6.3.2 IUBMB
Fragment: human Cbl TKB domain residues 47-351
Gene Name(s): CBL Gene View CBL2 RNF55
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 3 Unique
ID Chains Type Formula 2D Diagram Parent
ACE
Query on ACE
A NON-POLYMER C2 H4 O --
PTR
Query on PTR
A L-PEPTIDE LINKING C9 H12 N O6 P TYR
NH2
Query on NH2
A NON-POLYMER H2 N --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.0 Å
  • R-Value Free: 0.248
  • R-Value Work: 0.182
  • Space Group: P 6
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 122.57 α = 90.00
b = 122.57 β = 90.00
c = 56.23 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-21
  • Released Date: 2013-09-18
  • Deposition author(s): Borgstahl, G., Natarajan, A.

Revision History

No revisions since initial release