4GJI
Crystal structure of Pseudomonas stutzeri L-rhamnose isomerase mutant H101N in complex with L-rhamnopyranose
- PDB DOI: https://doi.org/10.2210/pdb4GJI/pdb
- Classification: ISOMERASE
- Organism(s): Stutzerimonas stutzeri
- Expression System: Escherichia coli
- Mutation(s): Yes 
- Deposited: 2012-08-09 Released: 2012-12-12 
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.195 
- R-Value Work: 0.175 
- R-Value Observed: 0.175 
This is version 1.3 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
L-rhamnose isomerase | 438 | Stutzerimonas stutzeri | Mutation(s): 2  Gene Names: L-RhI EC: 5.3.1.14 | ||
UniProt | |||||
Find proteins for Q75WH8 (Stutzerimonas stutzeri) Explore Q75WH8  Go to UniProtKB:  Q75WH8 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q75WH8 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 4 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
RM4 Query on RM4 | I [auth B], L [auth B], T [auth D] | beta-L-rhamnopyranose C6 H12 O5 SHZGCJCMOBCMKK-YJRYQGEOSA-N | |||
RAM Query on RAM | F [auth A], K [auth B], P [auth C], V [auth D] | alpha-L-rhamnopyranose C6 H12 O5 SHZGCJCMOBCMKK-HGVZOGFYSA-N | |||
RNS Query on RNS | E [auth A], J [auth B], O [auth C], U [auth D] | L-RHAMNOSE C6 H12 O5 PNNNRSAQSRJVSB-BXKVDMCESA-N | |||
MN Query on MN | G [auth A] H [auth A] M [auth B] N [auth B] Q [auth C] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.195 
- R-Value Work: 0.175 
- R-Value Observed: 0.175 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 75.124 | α = 90 |
b = 104.917 | β = 106.01 |
c = 112.376 | γ = 90 |
Software Name | Purpose |
---|---|
ADSC | data collection |
MOLREP | phasing |
CNS | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
Entry History 
Deposition Data
- Released Date: 2012-12-12  Deposition Author(s): Yoshida, H., Kamitori, S.
Revision History (Full details and data files)
- Version 1.0: 2012-12-12
Type: Initial release - Version 1.1: 2014-05-28
Changes: Database references - Version 1.2: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Data collection, Database references, Derived calculations, Structure summary - Version 1.3: 2023-11-08
Changes: Data collection, Database references, Refinement description, Structure summary