4GH5

Crystal structure of S-2-hydroxypropyl coenzyme M dehydrogenase (S-HPCDH)

Structural Biology Knowledgebase: 4GH5 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.171

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GH5

Classification: OXIDOREDUCTASE

Total Structure Weight: 111341.50

Macromolecule Entities
Molecule Chains Length Organism Details
Short-chain dehydrogenase/reductase SDR A, B, C, D 269 Xanthobacter autotrophicus Gene Name(s): Xaut_5073

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAD
Query on NAD

A, B, C, D NICOTINAMIDE-ADENINE-DINUCLEOTIDE
C21 H27 N7 O14 P2
BAWFJGJZGIEFAR-NNYOXOHSSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
ACT
Query on ACT

A, B, C, D ACETATE ION
C2 H3 O2
QTBSBXVTEAMEQO-UHFFFAOYSA-M
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.6 Å
  • R-Value Free: 0.199
  • R-Value Work: 0.171
  • Space Group: P 21 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 116.07 α = 90.00
b = 127.92 β = 90.00
c = 58.45 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-07
  • Released Date: 2013-03-27
  • Deposition author(s): Bakelar, J.W., Johnson, S.J.

Revision History

  • 2013-04-24
    Type: Citation | Details: Citation update