4GGL

Pyrrolopyrimidine inhibitors of dna gyrase b and topoisomerase iv, part i: structure guided discovery and optimization of dual targeting agents with potent, broad-spectrum enzymatic activity

Structural Biology Knowledgebase: 4GGL SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4GGL

Classification: Isomerase / Isomerase inhibitor

Total Structure Weight: 24370.83

Macromolecule Entities
Molecule Chains Length Organism Details
DNA gyrase subunit B A 215 Enterococcus faecalis EC#: 5.99.1.3 IUBMB
Fragment: unp residues 18-224
Gene Name(s): gyrB EF_0005
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CJC
Query on CJC

A 7-({4-[(3R)-3-aminopyrrolidin-1-yl]-5-chloro- 6-ethyl-7H-pyrrolo[2,3-d]pyrimidin-2-yl}sulfanyl)pyrido[2,3- b]pyrazin-2(1H)-one
C19 H19 Cl N8 O S
QARZTJJXVNQVNZ-SECBINFHSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
CJC N/A in BindingDB
Ki: 1 nM  BindingMOAD
Ki: 1 nM  PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.202
  • R-Value Work: 0.173
  • Space Group: P 21 21 21
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 54.85 α = 90.00
b = 58.58 β = 90.00
c = 66.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-08-06
  • Released Date: 2013-02-13
  • Deposition author(s): Bensen, D.C., Creighton, C.J., Tari, L.W.

Revision History

  • 2013-02-27
    Type: Citation | Details: Citation update