4G3X

Crystal Structure of Q61L H-Ras-GppNHp bound to the RBD of Raf Kinase

Structural Biology Knowledgebase: 4G3X SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.250

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4G3X

Classification: HYDROLASE / TRANSFERASE

Total Structure Weight: 28196.22

Macromolecule Entities
Molecule Chains Length Organism Details
GTPase HRas A 166 Homo sapiens Mutation: Q61L
Gene Name(s): HRAS Gene View HRAS1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
RAF proto-oncogene serine/threonine-protein kinase B 77 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: UNP residues 55-131
Gene Name(s): RAF1 Gene View RAF
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GNP
Query on GNP

A PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER
C10 H17 N6 O13 P3
UQABYHGXWYXDTK-UUOKFMHZSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.25 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.250
  • Space Group: P 3 2 1

Unit Cell:

Length (Å) Angle (°)
a = 91.40 α = 90.00
b = 91.40 β = 90.00
c = 93.11 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-07-15
  • Released Date: 2013-07-17
  • Deposition author(s): Fetics, S.K., Kearney, B.M., Buhrman, G., Mattos, C.

Revision History

  • 2015-03-18
    Type: Biological assembly | Details: --
  • 2015-03-11
    Type: Citation | Details: Citation update