4FDH

Structure of human aldosterone synthase, CYP11B2, in complex with fadrozole

Structural Biology Knowledgebase: 4FDH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4FDH

Classification: OXIDOREDUCTASE / OXIDOREDUCTASE INHIBITOR

Total Structure Weight: 677879.67

Macromolecule Entities
Molecule Chains Length Organism Details
Cytochrome P450 11B2, mitochondrial A, B, C..., D, E, F, G, H, I, J, K, LA, B, C, D, E, F, G, H, I, J, K, L 483 Homo sapiens EC#: 1.14.15.4 IUBMB 1.14.15.5 IUBMB
Gene Name(s): CYP11B2 Gene View

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
0T3
Query on 0T3

A, B, C, D, E, F, G, H, I, J, K, L 4-[(5R)-5,6,7,8-tetrahydroimidazo[1,5-a]pyridin- 5-yl]benzonitrile
fadrozole (Synonym)
C14 H13 N3
CLPFFLWZZBQMAO-CQSZACIVSA-N
Ligand Explorer
 
JSmol
HEM
Query on HEM

A, B, C, D, E, F, G, H, I, J, K, L PROTOPORPHYRIN IX CONTAINING FE
HEME (Synonym)
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
Ligand Explorer
 
JSmol
External Ligand Annotations
ID Binding Affinity (Sequence Identity %)
0T3 IC50: 1.6 - 119 nM (92 - 98) BindingDB

N/A in BindingMoad
N/A in PDBbind

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.71 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.224
  • Space Group: P 1 21 1
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 129.75 α = 90.00
b = 199.09 β = 112.08
c = 150.02 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-28
  • Released Date: 2013-01-30
  • Deposition author(s): Strushkevich, N., Shen, L., Tempel, W., Arrowsmith, C., Edwards, A., Usanov, S.A., Park, H.-W.

Revision History

  • 2013-02-13
    Type: Citation | Details: Citation update