4FD3

Crystal structure of apo-formed ymtOAR1

PDB DOI: https://doi.org/10.2210/pdb4FD3/pdb

Classification: OXIDOREDUCTASE
Organism(s): Saccharomyces cerevisiae S288C
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2012-05-26 Released: 2013-06-05
Deposition Author(s): Zhang, Y., Gao, Y., Ning, F., Niu, L., Teng, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.274
R-Value Work: 0.229
R-Value Observed: 0.231

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of apo-formed ymtOAR1

Zhang, Y., Gao, Y., Ning, F., Niu, L., Teng, M.

To be published.

Macromolecule Content

Total Structure Weight: 193.75 kDa
Atom Count: 11,328
Modelled Residue Count: 1,521
Deposited Residue Count: 1,716
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-oxoacyl-[acyl-carrier-protein] reductase	A, B, C, D, E A, B, C, D, E, F	286	Saccharomyces cerevisiae S288C	Mutation(s): 0 Gene Names: OAR1, YKL055C EC: 1.1.1.100
UniProt
Find proteins for P35731 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c)) Explore P35731 Go to UniProtKB: P35731
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P35731
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.60 Å
R-Value Free: 0.274
R-Value Work: 0.229
R-Value Observed: 0.231
Space Group: I 4₁ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 170.832	α = 90
b = 170.832	β = 90
c = 316.222	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
SOLVE	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2013-06-05

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2013-06-05
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.