4F50

Y-family DNA polymerase chimera Dbh-Dbh-Dpo4

Structural Biology Knowledgebase: 4F50 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.212

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4F50

Classification: TRANSFERASE / DNA

Total Structure Weight: 48652.12


Macromolecule Entities
Molecule Chains Length Organism Details
DNA polymerase IV A 361 Sulfolobus acidocaldarius Sulfolobus solfataricus EC#: 2.7.7.7 IUBMB
Gene Name(s): dbh Saci_0554 dpo4 SSO2448
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*CP*GP*GP*C)-3') P 11 synthetic Primer DNA
DNA (5'-D(*CP*CP*GP*CP*CP*T*GP*GP*CP*TP*TP*CP*CP*C)-3') T 14 synthetic Template DNA

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.21 Å
  • R-Value Free: 0.269
  • R-Value Work: 0.212
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 124.48 α = 90.00
b = 124.48 β = 90.00
c = 70.47 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-11
  • Released Date: 2013-01-02
  • Deposition author(s): Pata, J.D., Wilson, R.C.

Revision History

  • 2014-02-12
    Type: Source and taxonomy | Details: update Source information
  • 2014-01-29
    Type: Source and taxonomy | Details: update Source information
  • 2013-02-13
    Type: Citation | Details: Citation update