Y-family DNA polymerase chimera Dbh-Dbh-Dpo4
DOI:10.2210/pdb4f50/pdb   NDB ID: NA1805
4F50
Primary Citation
 
 
  •   Molecular Description Hide
    Classification: Transferase/dna
    Structure Weight: 48652.07
    Molecule: DNA polymerase IV
    Polymer: 1 Type: protein Length: 361
    Chains: A
    EC#: 2.7.7.7   
    Organism: Sulfolobus solfataricus P2 Sulfolobus acidocaldarius DSM 639
    Gene Names: dbh Saci_0554 dpo4 SSO2448
    UniProtKB: Protein Feature View | Search PDB | Q4JB80  

    UniProtKB: Protein Feature View | Search PDB | Q97W02  
    Molecule: DNA (5'-D(*GP*GP*GP*AP*AP*GP*CP*CP*GP*GP*C)-3')
    Polymer: 2 Type: dna Length: 11
    Chains: P
    Details: Primer DNA
    Molecule: DNA (5'-D(*CP*CP*GP*CP*CP*T*GP*GP*CP*TP*TP*CP*CP*C)-3')
    Polymer: 3 Type: dna Length: 14
    Chains: T
    Details: Template DNA
     
  •   Structure Validation Hide

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  • MolProbity Ramachandran Plot
     

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  •   Source Hide
    Polymer: 1
    Scientific Name: Sulfolobus acidocaldarius, sulfolobus solfataricus   Taxonomy   Expression System: Escherichia coli  
    Polymer: 2
    Scientific Name: Synthetic construct   Taxonomy    
    Polymer: 3
    Scientific Name: Synthetic construct   Taxonomy    
     
  •   Related PDB Entries Hide
    Identifier Details
    4F4W    
    4F4X    
    4F4Y    
    4F4Z    
     
  •   Ligand Chemical Component Hide
    Identifier Formula Name View Interactions
    CA
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    CA Ca
    CALCIUM ION
     
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  •   Structural Biology Knowledgebase Data Hide
     
  • Nucleic Acid Database Hide
    View the NDB ID associated with this structure:NA1805
     
 
Data in orange boxes are gathered from external resources (when available).
  Biological Assembly       
Biological assembly 1 assigned by authors and generated by PISA (software)
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  •   Deposition Summary Hide
    Authors:   Pata, J.D.,  Wilson, R.C.

    Deposition:   2012-05-11
    Release:   2013-01-02
    Last Modified (REVDAT):   2014-02-12
     
  •   Revision History    Hide
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    2014-02-12
    Source and taxonomy
    2014-01-29
    Source and taxonomy
    2013-02-13
    Citation
     
  •   Experimental Details Hide
    Method:   X-RAY DIFFRACTION
    Exp. Data:
      Structure Factors
    Resolution[Å]:   2.21
    R-Value: 0.214 (obs.)
    R-Free: 0.269
    Space Group: P 41 21 2
    Unit Cell:
      Length [Å] Angles [°]
    a = 124.48 α = 90.00 
    b = 124.48 β = 90.00 
    c = 70.47 γ = 90.00