4EYW

Crystal structure of rat carnitine palmitoyltransferase 2 in complex with 1-[(R)-2-(3,4-Dihydro-1H-isoquinoline-2-carbonyl)-piperidin-1-yl]-2-phenoxy-ethanone

Structural Biology Knowledgebase: 4EYW SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.173

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4EYW

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 144388.81

Macromolecule Entities
Molecule Chains Length Organism Details
Carnitine O-palmitoyltransferase 2, mitochondrial A, B 634 Rattus norvegicus EC#: 2.3.1.21 IUBMB
Fragment: UNP residues 27-658
Gene Name(s): Cpt2 Cpt-2
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
L0R
Query on L0R

A, B 1-[(2R)-2-(3,4-dihydroisoquinolin-2(1H)-ylcarbonyl)piperidin- 1-yl]-2-phenoxyethanone
C23 H26 N2 O3
CJQMUNJPWNNVDR-OAQYLSRUSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
P6G
Query on P6G

A, B HEXAETHYLENE GLYCOL
POLYETHYLENE GLYCOL PEG400 (Synonym)
C12 H26 O7
IIRDTKBZINWQAW-UHFFFAOYSA-N
Ligand Explorer
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.197
  • R-Value Work: 0.173
  • Space Group: P 42 21 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 148.14 α = 90.00
b = 148.14 β = 90.00
c = 192.07 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-02
  • Released Date: 2013-04-24
  • Deposition author(s): Rudolph, M.G., Benz, J., Burger, D., Thoma, R., Rufer, A., Joseph, C.

Revision History

  • 2013-07-03
    Type: Citation | Details: Citation update