4EYG

Crystal structure of solute binding protein of ABC transporter from Rhodopseudomonas palustris BisB5 in complex with vanillic acid

Structural Biology Knowledgebase: 4EYG SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.86 Å
  • R-Value Free: 0.191
  • R-Value Work: 0.135

Literature

Macromolecules
Sequence Display for 4EYG

Classification: TRANSPORT PROTEIN

Total Structure Weight: 80545.48

Macromolecule Entities
Molecule Chains Length Organism Details
Twin-arginine translocation pathway signal A, B 368 Rhodopseudomonas palustris Fragment: UNP residues 27-392
Gene Name(s): RPD_1586
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
VNL
Query on VNL

A, B 4-HYDROXY-3-METHOXYBENZOATE
vanillate (Synonym)
C8 H7 O4
WKOLLVMJNQIZCI-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
IPA
Query on IPA

A, B ISOPROPYL ALCOHOL
2-PROPANOL (Synonym)
C3 H8 O
KFZMGEQAYNKOFK-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 46.87 α = 90.00
b = 130.54 β = 109.22
c = 70.39 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-05-01
  • Released Date: 2012-05-30
  • Deposition author(s): Chang, C., Mack, J., Zerbs, S., Collart, F., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2012-10-24
    Type: Citation | Details: Citation update
  • 2012-09-12
    Type: Citation | Details: Citation update