4EVU

Crystal structure of C-terminal domain of putative periplasmic protein ydgH from S. enterica


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.45 Å
  • R-Value Free: 0.172
  • R-Value Work: 0.133

Literature

Macromolecules
Sequence Display for 4EVU

Classification: Structural Genomics Unknown Function

Total Structure Weight: 16747.32

Macromolecule Entities
Molecule Chains Length Organism Details
Putative periplasmic protein ydgH A, B 72 Salmonella enterica Gene Name(s): ydgH STM1478
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A, B SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

B CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
MSE
Query on MSE
A, B L-PEPTIDE LINKING C5 H11 N O2 Se MET

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 39.08 α = 90.00
b = 52.52 β = 109.38
c = 39.14 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-26
  • Released Date: 2012-05-30
  • Deposition author(s): Michalska, K., Cui, H., Xu, X., Brown, R.N., Cort, J.R., Heffron, F., Nakayasu, E.S., Savchenko, A., Adkins, J.N., Joachimiak, A., Program for the Characterization of Secreted Effector Proteins (PCSEP), Midwest Center for Structural Genomics (MCSG)

Revision History

  • 2014-07-30
    Type: Database references