4ET7

Crystal structure of Eph receptor 5

• PDB DOI: https://doi.org/10.2210/pdb4ET7/pdb

• Classification: TRANSFERASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2012-04-24 Released: 2013-05-22 
• Deposition Author(s): Shi, J.H., Zhu, W.L., Song, J.X.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.282 
• R-Value Work: 0.205 
• R-Value Observed: 0.212 

Literature

Crystal structure of Eph receptor 5

Shi, J.H., Zhu, W.L., Song, J.X.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 20.32 kDa 
• Atom Count: 1,435 
• Modelled Residue Count: 174 
• Deposited Residue Count: 179 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ephrin type-A receptor 5	A	179	Homo sapiens	Mutation(s): 1  Gene Names: BSK, EHK1, EPHA5, HEK7, TYRO4 EC: 2.7.10.1
UniProt & NIH Common Fund Data Resources
Find proteins for P54756 (Homo sapiens) Explore P54756  Go to UniProtKB:  P54756
PHAROS:  P54756 GTEx:  ENSG00000145242

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.282 
• R-Value Work: 0.205 
• R-Value Observed: 0.212 
• Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 55.04	α = 90
b = 82.721	β = 90
c = 81.166	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PROTEUM PLUS	data collection
SAINT	data reduction
PROTEUM PLUS	data scaling
PHASES	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2013-05-22 
Deposition Author(s): Shi, J.H., Zhu, W.L., Song, J.X.

Revision History  

• Version 1.0: 2013-05-22
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description