4ESH

The crystal structure of thymidylate kinase from Pseudomonas aeruginosa PAO1 in complex with deoxythymidine.

Structural Biology Knowledgebase: 4ESH SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.182

Literature

Macromolecules
Sequence Display for 4ESH

Classification: TRANSFERASE

Total Structure Weight: 23651.01

Macromolecule Entities
Molecule Chains Length Organism Details
Thymidylate kinase A 213 Pseudomonas aeruginosa EC#: 2.7.4.9 IUBMB
Gene Name(s): tmk PA2962
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
THM
Query on THM

A THYMIDINE
DEOXYTHYMIDINE; 2'-DEOXYTHYMIDINE (Synonym)
C10 H14 N2 O5
IQFYYKKMVGJFEH-XLPZGREQSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.95 Å
  • R-Value Free: 0.226
  • R-Value Work: 0.182
  • Space Group: P 32 2 1

Unit Cell:

Length (Å) Angle (°)
a = 55.35 α = 90.00
b = 55.35 β = 90.00
c = 114.77 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-04-23
  • Released Date: 2012-05-23
  • Deposition author(s): Tan, K., Joachimiak, G., Jedrzejczak, R., Sacchettini, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG), Structures of Mtb Proteins Conferring Susceptibility to Known Mtb Inhibitors (MT

Revision History

No revisions since initial release