4DZ0

Crystal structure of the Cu-adduct of human H-Ferritin variant MIC1 labeled with a dansyl fluorophore

Structural Biology Knowledgebase: 4DZ0 SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.224

wwPDB Validation Full Report


Literature

Macromolecules
Sequence Display for 4DZ0

Classification: OXIDOREDUCTASE

Total Structure Weight: 20640.63

Macromolecule Entities
Molecule Chains Length Organism Details
Ferritin heavy chain A 172 Homo sapiens EC#: 1.16.3.1 IUBMB
Fragment: UNP residues 6-177
Mutation: Y39E, K53C, L56H, R63H, E67H, N74E, K86Q, P88A, C90E, C102A, C130A
Gene Name(s): FTH1 Gene View FTH FTHL6 OK/SW-cl.84 PIG15

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
AEN
Query on AEN

A 5-(1-SULFONAPHTHYL)-ACETYLAMINO-ETHYLAMINE
C14 H16 N2 O4 S
FBZFLXJHAMMUQM-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer
 
JSmol
CU
Query on CU

A COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
Ligand Explorer
 
JSmol

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.5 Å
  • R-Value Free: 0.300
  • R-Value Work: 0.224
  • Space Group: F 4 3 2
  • Electron Density Server: EDS EDS

Unit Cell:

Length (Å) Angle (°)
a = 180.43 α = 90.00
b = 180.43 β = 90.00
c = 180.43 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2012-02-29
  • Released Date: 2013-01-23
  • Deposition author(s): Tezcan, F.A., Huard, D.J.E.

Revision History

  • 2013-03-06
    Type: Citation | Details: Citation update
  • 2013-02-13
    Type: Citation | Details: Citation update